Articles

Also cf. my Google Scholar profile.

• J.-P. Gehrcke, M. T. Pisabarro. Identification and characterization of a glycosaminoglycan binding site on interleukin-10 via molecular simulation methods. Journal of Molecular Graphics and Modelling, Volume 62 pp 97-104, 2015.

• J. Salbach-Hirsch, S. A. Samsonov, V. Hintze, C. Hofbauer, A.-K. Picke, M. Rauner, J.-P. Gehrcke, S. Moeller, M. Schnabelrauch, D. Scharnweber, M. T. Pisabarro, L. C. Hofbauer. Structural and functional insights into sclerostin-glycosaminoglycan interactions in bone. Biomaterials, Volume 67 pp 335-345, 2015.

• G. Künze, J.-P. Gehrcke, M. T. Pisabarro, D. Huster. NMR characterization of the binding properties and conformation of glycosaminoglycans interacting with interleukin-10. Glycobiology, Volume 24 (11) pp 1036-1049, 2014.

• S. A. Samsonov*, J.-P. Gehrcke*, and M. T. Pisabarro. Flexibility and explicit solvent in molecular dynamics-based docking of protein-glycosaminoglycan systems. Journal of Chemical Information and Modeling, Volume 54 (2) pp 582-592, 2014. (*shared first authorship)

• J. Sage, F. Mallèvre, F. Barbarin-Costes, S. A. Samsonov, J.-P. Gehrcke, M. T. Pisabarro, E. Perrier, S. Schnebert, A. Roget, T. Livache, C. Nizard, G. Lalmanach, F. Lecaille. Binding of Chondroitin 4-Sulfate to Cathepsin S Regulates Its Enzymatic Activity. Biochemistry, Volume 52 (37) pp 6487-6498, 2013.

• J.-P. Gehrcke, M.A. Rückert, T. Kampf, W.H. Kullmann, P.M. Jakob, V.C. Behr. Investigation of the Magnetic Particle Imaging signal’s dependency on ferrofluid concentration. Magnetic Nanoparticles: Particle Science, Imaging Technology, and Clinical Applications: Proceedings of the First International Workshop on Magnetic Particle Imaging, pp 73-78, 2010.

• J.-P. Gehrcke, S. Kluth, S. Stonjek. ATLAS @ Amazon Web Services. Journal of Physics: Conference Series 219 052020, 2010.

Conference contributions

• J.-P. Gehrcke. Investigation of protein-glycosaminoglycan interaction using molecular simulation methods. DFG Transregio 67, Frühjahrsklausur, Nimbschen, Germany, 2014 (talk).

• J.-P. Gehrcke, S. A. Samsonov, M. T. Pisabarro. Flexibility and explicit solvent in molecular dynamics-based docking of protein-glycosaminoglycan systems. Frontiers in dynamics simulations of biological molecules, Barcelona, Spain, 2013 (poster).

• J.-P. Gehrcke. Investigation of IL-10-GAG interaction using molecular simulation methods. DFG Transregio 67, Herbstklausur, Altenburg, Germany, 2013 (talk).

• G. Künze, S. Theisgen, J.-P. Gehrcke, M. T. Pisabarro, D. Huster. Structural Investigation of Glycosaminoglycan Binding by the Immune-Regulatory Protein Interleukin-10. International Carbohydrate Symposium, Madrid, Spain, 2012 (poster).

• J.-P. Gehrcke. Investigation of IL-10-GAG interaction using molecular simulation methods. DFG Transregio 67, Frühjahrsklausur, Nimbschen, Germany, 2012 (talk).

• J.-P. Gehrcke, S.A. Samsonov, M.T. Pisabarro. Dynamic Molecular Docking. DYPROT, Dresden, Germany, 2012 (poster).

• V.C. Behr, T. Kampf, J.-P. Gehrcke, M.A. Rückert, P. Vogel, W.H. Kullmann, P.M. Jakob. Non-Linear Concentration Effects in Magnetic Particle Imaging. Proc. ISMRM 1437, Montreal, Canada, 2011 (poster).

• J.-P. Gehrcke, M.A. Rückert, T. Kampf, W.H. Kullmann, P.M. Jakob, V.C. Behr. Investigation of the Magnetic Particle Imaging signal’s dependency on ferrofluid concentration. International Workshop on Magnetic Particle Imaging, Lübeck, Germany, 2010 (poster & talk).

• J.-P. Gehrcke, M.A. Rückert, T. Kampf, W.H. Kullmann, P.M. Jakob, V.C. Behr. Impact of local SPIO concentration on the Magnetic Particle Imaging signal. International Conference on Magnetic Resonance Microscopy, Yellowstone, USA, 2009 (poster).

• J.-P. Gehrcke, S. Kluth, S. Stonjek. ATLAS @ Amazon Web Services. Computing in High Energy and Nuclear Physics Conference, Prague, Czech Republic, 2009 (poster & talk).

Theses

• J.-P. Gehrcke. Investigation of the interleukin-10-GAG interaction using molecular simulation methods. Dr. rer. nat. thesis. Structural Bioinformatics group, BIOTEC, TU Dresden (through Faculty of Science, Physics department), 2014.

• J.-P. Gehrcke. Characterization of the Magnetic Particle Imaging Signal Based on Theory, Simulation, and Experiment. M. Sc. hon. thesis. Department of Experimental Physics 5 (Biophysics), University of Würzburg, 2010.

• J.-P. Gehrcke. Amazon Web Services for ATLAS Computing. Max-Planck-Institut für Physik, München, 2009.

• J.-P. Gehrcke. Diffusionstensor-Magnetresonanz-Tomographie des menschlichen Gehirns zur Rekonstruktion von Nervenfaserbahnen: Einfluss der nicht diffusionsgewichteten Bilder. B. Sc. thesis. Max-Planck-Institut für biophysikalische Chemie (BiomedNMR), Göttingen, 2007. Translated title: “Diffusion tensor Magnetic Resonance Tomography of human’s brain for nerve fiber reconstruction: impact of images without diffusion weighting”

• J.-P. Gehrcke, M. Lichtner. Herstellung und Charakterisierung organischer Solarzellen auf Basis halbleitender Polymer-Fulleren-Heterogemische. University of Würzburg, 2007.
  Translated title: “Production and characterization of organic solar cells based on semi-conducting polymer-fullerene-heterocompounds”

• J.-P. Gehrcke, M. Lichtner. Steuerung einer ferromagnetischen Kugel in drei Dimensionen. Extraordinary thesis for “Abitur” and “Jugend forscht” participation, 2005.
  Translated title: “Steering a ferromagnetic sphere in three dimensions.”

Other talks

A selection of slides of talks mainly held in the course of studying physics.

2009:

• “Das Rauschen überlisten”
  Tricking noise: Stochastic Resonance, Lock-in Amplifier, Dithering (German slides)

• “Magnetic Particle Imaging”
  A new imaging technique for medicine (German slides)

2008:

• “Magnetohydrodynamik”
  MHD equations, Alfven waves, numerical methods (German slides)

• “Amazon Web Services for ATLAS Computing”
  Cloud Computing, Virtualisation, ATLAS Software, Job System (German slides)

• “Diffusionstensor-Magnetresonanz-Tomographie des menschlichen Gehirns zur Rekonstruktion von Nervenfaserbahnen”
  B. Sc. thesis project: Reconstruction of nerve fibers in human’s brain (German slides)

• “Quantencomputer”
  Quantum Computer: Motivation, logics, experimental realisations (German slides)

• “Realisierung eines Quantencomputers mit Ionen”
  Quantum computer with ions: Paul trap, Bloch sphere, Rabi oscillation, idea of Cirac & Zoller (German slides)

• “The Totally Asymmetric Simple Exclusion Process (TASEP)”
  Simulation results for the TASEP process (German slides)

• “Die Entdeckung des Gluons bei PETRA”
  Particle physics: discovering the gluon at PETRA (German slides)

• “International Linear Collider”
  Particle physics: a new linear collider (German slides)

2007:

• “Diffusion Magnetic Resonance Imaging”
  Diffusion weighted MRI: stroke diagnostics, nerve fiber reconstruction

• “Dual Beam Optical Tweezers”
  Radiation pressure, measuring forces, hold and move particles with light

Other documents created during studies are listed here: http://gehrcke.de/files/stud/